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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 401 165

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 525 repositories
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 30 11 292 5 Updated Oct 30, 2026
  • ZeroMQ-XOP Public

    The ZeroMQ XOP enables Igor Pro to interface over the network using a ZeroMQ messaging layer and JSON as message format

    AllenInstitute/ZeroMQ-XOP's past year of commit activity
    C 10 BSD-3-Clause 8 13 (1 issue needs help) 4 Updated Oct 30, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims's past year of commit activity
    Python 0 MIT 1 5 2 Updated Oct 30, 2026
  • MultiTaskMPN Public
    AllenInstitute/MultiTaskMPN's past year of commit activity
    Python 2 2 0 0 Updated Oct 30, 2026
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    AllenInstitute/neuroglancer's past year of commit activity
    TypeScript 0 Apache-2.0 427 0 1 Updated Oct 30, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader's past year of commit activity
    Python 9 MIT 1 0 0 Updated Oct 30, 2026
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access's past year of commit activity
    Jupyter Notebook 128 41 21 7 Updated Oct 29, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 22 BSD-3-Clause 10 52 14 Updated Oct 29, 2026
  • neuroanalysis Public

    Modular analysis tools for neurophysiology data

    AllenInstitute/neuroanalysis's past year of commit activity
    Python 9 MIT 11 1 2 Updated Oct 29, 2026
  • arborist Public

    Trees are the most inspiring structures

    AllenInstitute/arborist's past year of commit activity
    Python 2 MIT 0 0 3 Updated Oct 29, 2026
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