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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

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  1. toil toil Public

    A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

    Python 936 246

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 282 51

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 55 22

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Python 32 35

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 27 5

Repositories

Showing 10 of 163 repositories
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul's past year of commit activity
    Python 11 Apache-2.0 4 628 13 Updated Oct 29, 2026
  • duos-ui Public

    Broad Institute Data Use Oversight System

    DataBiosphere/duos-ui's past year of commit activity
    TypeScript 12 BSD-3-Clause 4 0 6 Updated Oct 29, 2026
  • consent Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent's past year of commit activity
    Java 11 BSD-3-Clause 2 0 19 Updated Oct 29, 2026
  • toil Public

    A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

    DataBiosphere/toil's past year of commit activity
    Python 936 Apache-2.0 246 398 8 Updated Oct 29, 2026
  • terra-workspace-data-service Public
    DataBiosphere/terra-workspace-data-service's past year of commit activity
    Java 5 BSD-3-Clause 0 0 5 Updated Oct 29, 2026
  • terra-scientific-pipelines-service Public
    DataBiosphere/terra-scientific-pipelines-service's past year of commit activity
    Java 2 BSD-3-Clause 0 0 1 Updated Oct 29, 2026
  • terra-ui Public

    Web user interface for the Terra platform

    DataBiosphere/terra-ui's past year of commit activity
    TypeScript 55 BSD-3-Clause 22 145 5 Updated Oct 29, 2026
  • azul-bigquery-emulator Public Forked from goccy/bigquery-emulator

    BigQuery emulator server implemented in Go

    DataBiosphere/azul-bigquery-emulator's past year of commit activity
    Go 0 MIT 197 0 0 Updated Oct 29, 2026
  • azul-go-zetasqlite Public Forked from goccy/go-zetasqlite

    A database driver library that interprets ZetaSQL queries and runs them using SQLite3

    DataBiosphere/azul-go-zetasqlite's past year of commit activity
    Go 0 MIT 47 0 0 Updated Oct 29, 2026
  • azul-go-zetasql Public Forked from goccy/go-zetasql

    Go bindings for ZetaSQL

    DataBiosphere/azul-go-zetasql's past year of commit activity
    Go 0 Apache-2.0 17 0 0 Updated Oct 29, 2026
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