update overview of available software

docs/available_software/detail/Abseil.md

@@ -50,6 +50,7 @@ same code we depend on in our daily coding lives.
 | --- | --- | --- | --- | --- |
 |20260107.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`, `aws/graviton4`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`, `graniterapids`<br/>|*(none)*|<span class="software-eessi-version-202606">2026.06</span>|`Abseil/20260107.1-GCCcore-15.2.0`|
 |20250512.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`Abseil/20250512.1-GCCcore-14.3.0`|
+|20250512.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`Abseil/20250512.1-GCCcore-14.2.0`|
 |20240722.0|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`Abseil/20240722.0-GCCcore-13.3.0`|
 |20240116.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`Abseil/20240116.1-GCCcore-13.2.0`|
 |20230125.3|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`Abseil/20230125.3-GCCcore-12.3.0`|

docs/available_software/detail/BLAST+.md

@@ -41,6 +41,7 @@ Basic Local Alignment Search Tool, or BLAST, is an algorithm
 
 |BLAST+ version|Supported CPU targets|Supported GPU targets|EESSI version|Module|
 | --- | --- | --- | --- | --- |
+|2.17.0|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`BLAST+/2.17.0-gompi-2025b`|
 |2.17.0|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`BLAST+/2.17.0-gompi-2025a`|
 |2.14.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`BLAST+/2.14.1-gompi-2023a`|
 |2.14.0|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`BLAST+/2.14.0-gompi-2022b`|

docs/available_software/detail/Compress-Raw-Zlib.md

@@ -0,0 +1,40 @@
+---
+json_ld:
+  '@context': https://schema.org
+  '@type': SoftwareApplication
+  applicationCategory: DeveloperApplication
+  description: Low-Level Interface to zlib or zlib-ng compression library
+  license: Not confirmed
+  name: Compress-Raw-Zlib
+  offers:
+    '@type': Offer
+    price: 0
+  operatingSystem: LINUX
+  review:
+    '@type': Review
+    author:
+      '@type': Organization
+      name: EESSI
+    reviewBody: Application has been successfully made available on all architectures
+      supported by EESSI
+    reviewRating:
+      '@type': Rating
+      ratingValue: 5
+  softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available
+    on your system
+  softwareVersion: '[''2.222'']'
+  url: https://metacpan.org/pod/Compress::Raw::Zlib
+---
+# Compress-Raw-Zlib
+
+
+Low-Level Interface to zlib or zlib-ng compression library
+
+<small>homepage: </small><span class="software-link">[https://metacpan.org/pod/Compress::Raw::Zlib](https://metacpan.org/pod/Compress::Raw::Zlib)</span>
+
+## Available installations
+
+
+|Compress-Raw-Zlib version|Supported CPU targets|Supported GPU targets|EESSI version|Module|
+| --- | --- | --- | --- | --- |
+|2.222|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`Compress-Raw-Zlib/2.222-GCCcore-14.3.0`|

docs/available_software/detail/Go.md

@@ -23,7 +23,7 @@ json_ld:
       ratingValue: 5
   softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available
     on your system
-  softwareVersion: '[''1.26.7'', ''1.26.4'', ''1.25.0'', ''1.23.6'']'
+  softwareVersion: '[''1.26.10'', ''1.26.7'', ''1.26.4'', ''1.25.0'', ''1.23.6'']'
   url: https://www.golang.org
 ---
 # Go
@@ -39,6 +39,7 @@ Go is an open source programming language that makes it easy to build
 
 |Go version|Supported CPU targets|Supported GPU targets|EESSI version|Module|
 | --- | --- | --- | --- | --- |
+|1.26.10|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`Go/1.26.10`|
 |1.26.7|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`, `aws/graviton4`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`, `graniterapids`<br/>|*(none)*|<span class="software-eessi-version-202606">2026.06</span>|`Go/1.26.7`|
 |1.26.4|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`Go/1.26.4`|
 |1.25.0|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`Go/1.25.0`|

docs/available_software/detail/HTSlib.md

@@ -41,6 +41,7 @@ A C library for reading/writing high-throughput sequencing data.
 | --- | --- | --- | --- | --- |
 |1.23.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`, `aws/graviton4`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`, `graniterapids`<br/>|*(none)*|<span class="software-eessi-version-202606">2026.06</span>|`HTSlib/1.23.1-GCC-15.2.0`|
 |1.22.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`HTSlib/1.22.1-GCC-14.3.0`|
+|1.22.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`HTSlib/1.22.1-GCC-14.2.0`|
 |1.21|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`HTSlib/1.21-GCC-13.3.0`|
 |1.19.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`HTSlib/1.19.1-GCC-13.2.0`|
 |1.18|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`HTSlib/1.18-GCC-12.3.0`|

docs/available_software/detail/Jmol.md

@@ -0,0 +1,40 @@
+---
+json_ld:
+  '@context': https://schema.org
+  '@type': SoftwareApplication
+  applicationCategory: DeveloperApplication
+  description: 'Jmol: an open-source Java viewer for chemical structures in 3D'
+  license: Not confirmed
+  name: Jmol
+  offers:
+    '@type': Offer
+    price: 0
+  operatingSystem: LINUX
+  review:
+    '@type': Review
+    author:
+      '@type': Organization
+      name: EESSI
+    reviewBody: Application has been successfully made available on all architectures
+      supported by EESSI
+    reviewRating:
+      '@type': Rating
+      ratingValue: 5
+  softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available
+    on your system
+  softwareVersion: '[''16.5.3'']'
+  url: http://jmol.sourceforge.net/
+---
+# Jmol
+
+
+Jmol: an open-source Java viewer for chemical structures in 3D
+
+<small>homepage: </small><span class="software-link">[http://jmol.sourceforge.net/](http://jmol.sourceforge.net/)</span>
+
+## Available installations
+
+
+|Jmol version|Supported CPU targets|Supported GPU targets|EESSI version|Module|
+| --- | --- | --- | --- | --- |
+|16.5.3|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`Jmol/16.5.3-Java-21`|

docs/available_software/detail/JsonCpp.md

@@ -44,4 +44,5 @@ json_ld:
 | --- | --- | --- | --- | --- |
 |1.9.7|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`, `aws/graviton4`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`, `graniterapids`<br/>|*(none)*|<span class="software-eessi-version-202606">2026.06</span>|`JsonCpp/1.9.7-GCCcore-15.2.0`|
 |1.9.6|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`JsonCpp/1.9.6-GCCcore-14.3.0`|
+|1.9.6|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`JsonCpp/1.9.6-GCCcore-14.2.0`|
 |1.9.5|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`JsonCpp/1.9.5-GCCcore-12.3.0`|

docs/available_software/detail/Judy.md

@@ -37,5 +37,6 @@ A C library that implements a dynamic array.
 
 |Judy version|Supported CPU targets|Supported GPU targets|EESSI version|Module|
 | --- | --- | --- | --- | --- |
+|1.0.5|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`Judy/1.0.5-GCCcore-14.2.0`|
 |1.0.5|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`Judy/1.0.5-GCCcore-12.3.0`|
 |1.0.5|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`Judy/1.0.5-GCCcore-12.2.0`|

docs/available_software/detail/Kraken.md

@@ -0,0 +1,52 @@
+---
+json_ld:
+  '@context': https://schema.org
+  '@type': SoftwareApplication
+  applicationCategory: DeveloperApplication
+  description: "Kraken is a system for assigning taxonomic labels to short DNA sequences,\n\
+    \ usually obtained through metagenomic studies. Previous attempts by other\n bioinformatics\
+    \ software to accomplish this task have often used sequence\n alignment or machine\
+    \ learning techniques that were quite slow, leading to\n the development of less\
+    \ sensitive but much faster abundance estimation\n programs. Kraken aims to achieve\
+    \ high sensitivity and high speed by\n utilizing exact alignments of k-mers and\
+    \ a novel classification algorithm."
+  license: Not confirmed
+  name: Kraken
+  offers:
+    '@type': Offer
+    price: 0
+  operatingSystem: LINUX
+  review:
+    '@type': Review
+    author:
+      '@type': Organization
+      name: EESSI
+    reviewBody: Application has been successfully made available on all architectures
+      supported by EESSI
+    reviewRating:
+      '@type': Rating
+      ratingValue: 5
+  softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available
+    on your system
+  softwareVersion: '[''1.1.1'']'
+  url: https://ccb.jhu.edu/software/kraken/
+---
+# Kraken
+
+
+Kraken is a system for assigning taxonomic labels to short DNA sequences,
+ usually obtained through metagenomic studies. Previous attempts by other
+ bioinformatics software to accomplish this task have often used sequence
+ alignment or machine learning techniques that were quite slow, leading to
+ the development of less sensitive but much faster abundance estimation
+ programs. Kraken aims to achieve high sensitivity and high speed by
+ utilizing exact alignments of k-mers and a novel classification algorithm.
+
+<small>homepage: </small><span class="software-link">[https://ccb.jhu.edu/software/kraken/](https://ccb.jhu.edu/software/kraken/)</span>
+
+## Available installations
+
+
+|Kraken version|Supported CPU targets|Supported GPU targets|EESSI version|Module|
+| --- | --- | --- | --- | --- |
+|1.1.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`, `zen5`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`Kraken/1.1.1-GCCcore-14.3.0`|