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Follow SPEC 0 instead of NEP 29 #578

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61c42b6
Follow SPEC 0 instead of NEP 29
dweindl Oct 28, 2026
e20f112
Add PR link to changelog
dweindl Oct 28, 2026
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10 changes: 10 additions & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,5 +1,15 @@
# PEtab changelog

## 0.11 series

### 0.11.0 (unreleased)

**Breaking changes**
* Follow SPEC 0 instead of NEP 29 for minimum supported dependency versions.
Require `numpy>=2.2`, and for the `vis` extra, `matplotlib>=3.10` and
`scipy>=1.15`
(by @dweindl in https://github.com/PEtab-dev/libpetab-python/pull/578)

## 0.10 series

### 0.10.0
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4 changes: 3 additions & 1 deletion README.md
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Expand Up @@ -23,7 +23,9 @@ and the easiest way to install it is running
pip3 install petab

`petab` requires Python>=3.12. We are following
[NumPy's Python support policy](https://numpy.org/neps/nep-0029-deprecation_policy.html).
[SPEC 0](https://scientific-python.org/specs/spec-0000/)
for the minimum supported versions of Python and core dependencies,
but may keep supporting a Python version until NumPy drops it.

Development versions of the PEtab library can be installed using

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5 changes: 4 additions & 1 deletion doc/development.rst
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Expand Up @@ -23,7 +23,10 @@ remove it earlier.
Python compatibility
--------------------

We follow `numpy's Python support policy <https://numpy.org/neps/nep-0029-deprecation_policy.html>`_.
We follow `SPEC 0 <https://scientific-python.org/specs/spec-0000/>`_
for the minimum supported versions of Python and core dependencies
(NumPy, SciPy, Matplotlib, pandas, ...),
but may keep supporting a Python version until NumPy drops it.

Release process
---------------
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9 changes: 4 additions & 5 deletions pyproject.toml
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Expand Up @@ -11,7 +11,7 @@ dynamic = ["version", "readme"]
description = "Parameter estimation tabular data"
requires-python = ">=3.12"
dependencies = [
"numpy>=2.1",
"numpy>=2.2",
"pandas>=2.3",
"python-libsbml>=5.17.0",
"sympy",
Expand Down Expand Up @@ -40,9 +40,9 @@ combine = [
"python-libcombine>=0.2.6",
]
vis = [
"matplotlib>=3.6.0",
"matplotlib>=3.10",
"seaborn",
"scipy"
"scipy>=1.15"
]
reports = [
"Jinja2",
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"sphinx-rtd-theme>=0.5.1",
"m2r2",
"myst-nb>=0.14.0",
# https://github.com/spatialaudio/nbsphinx/issues/687#issuecomment-1339271312
"ipython>=7.21.0, !=8.7.0",
"ipython>=8.30",
"pysb",
]
dev = [
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