Systems and Synthetic Biology at Chalmers University of Technology

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1. Human-GEM Human-GEM Public

   The generic genome-scale metabolic model of Homo sapiens

   Python 174 66

2. yeast-GEM yeast-GEM Public

   The consensus GEM for Saccharomyces cerevisiae

   MATLAB 137 50

3. RAVEN RAVEN Public

   The RAVEN Toolbox for genome scale model reconstruction, curation and analysis. This repository holds RAVEN 2.x; RAVEN 3 is developed in CompMetEng/RAVEN.

   MATLAB 132 61

4. GECKO GECKO Public

   Toolbox for including enzyme constraints on a genome-scale model. This repository holds GECKO 3.x; GECKO 4 is developed in CompMetEng/GECKO.

   MATLAB 95 55

5. DLKcat DLKcat Public

   Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

   Python 207 68