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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.9k 669

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 254 216

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 196 32

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    64 14

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 56 61

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 37 12

Repositories

Showing 10 of 74 repositories
  • snakefmt Public

    The uncompromising Snakemake code formatter

    snakemake/snakefmt's past year of commit activity
    Python 196 MIT 32 2 3 Updated Oct 23, 2026
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers's past year of commit activity
    Python 254 216 4 41 Updated Oct 23, 2026
  • snakemake-report-plugin-rocrate Public

    Snakemake Report Plugin to automatically create Workflow Run RO-Crate after workflow runs holding all metadata of that workflow

    snakemake/snakemake-report-plugin-rocrate's past year of commit activity
    Python 2 MIT 2 2 3 Updated Oct 23, 2026
  • snakemake-wrapper-utils Public

    Utility functions and classes shared between Snakemake wrappers

    snakemake/snakemake-wrapper-utils's past year of commit activity
    Python 5 MIT 6 0 0 Updated Oct 22, 2026
  • snakedeploy Public

    deploy a snakemake pipeline directly from version control (under development)

    snakemake/snakedeploy's past year of commit activity
    Python 28 MPL-2.0 14 14 6 Updated Oct 21, 2026
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake's past year of commit activity
    Python 2,891 MIT 669 993 (1 issue needs help) 131 Updated Oct 21, 2026
  • snakemake-executor-plugin-slurm-jobstep Public

    A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)

    snakemake/snakemake-executor-plugin-slurm-jobstep's past year of commit activity
    Python 1 MIT 10 2 3 Updated Oct 19, 2026
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog's past year of commit activity
    Python 37 MIT 12 2 (1 issue needs help) 0 Updated Oct 19, 2026
  • snakemake-interface-common Public

    Common functions and classes for Snakemake and its plugins

    snakemake/snakemake-interface-common's past year of commit activity
    Python 0 MIT 7 6 4 Updated Oct 11, 2026
  • snakemake-software-deployment-plugin-conda Public

    A Snakemake software deployment plugin for using conda packages. Implemented using py-rattler.

    snakemake/snakemake-software-deployment-plugin-conda's past year of commit activity
    Python 2 1 2 4 Updated Oct 2, 2026
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