rescience

📓 Code for "Fluctuation Domains in Adaptive Evolution", published in TPB

Replicating a Multi-Functional Synthetic Gene Network

A unified, from-scratch PyTorch zoo of 9 entity-alignment models (JAPE, GCN-Align, BootEA, NAEA, KECG, AliNet, MRAEA, RREA, DGMC) reproduced on DBP15K — one data layer, one metrics module, one trainer pattern, with paper-vs-repo results and documented deviations.

Code associated with the article "[Rp] Dendrodendritic inhibition and simulated odor responses in a detailed olfactory bulb network model"

[Re] lulcc (Moulds et al., 2015): replication of the Plum Island Ecosystems application in Python with DisSModel and DisSLUCC, for ReScience C

ReScience C website

ReScience C publication — three-way information-theoretic analysis of transfer functions; a replication of Smyth, Phillips & Kay (1996).

Replication article for ReScience C: [Re] A Standard Computable General Equilibrium (CGE) Model in GAMS (Lofgren, Harris and Robinson 2002), reimplemented in Python as pystdcge and checked against IFPRI's GAMS program

Replication of Glass and Sun (1994) submitted to ReScience C

Reference outputs of lulcc 1.0.4 (R) for the Plum Island Ecosystems application of Moulds et al. (2015), generated in a pinned Docker image, for replication in ReScience C

ReScience C submissions

Replicating the figure that launched a thousand touchscreens. A hands-on reproduction of Fitts (1954) in Python.

Repository for the reproduction of Faircal, as published in ReScience C volume 9 issue 2

ReScience C submission: pre-registered replication of the dreaming Hopfield kernel (Fachechi, Agliari, Barra 2019) at N = 1 000 — code, data, pre-registrations