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Sync with template (9421478) - #109
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A folder name with a slash is a subfolder (Label-free/control): a folder holds and selects the files of its subfolders, renaming or removing it takes them along, and the Samples table takes the last part as the condition. upload_widget(fallback=...) and select_input_file(upload=...) accept a dict of example file -> folder, so example files copied into a workspace arrive in their folders. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01FkEGen3fmwFSWXXzfmCAZ3
A folder whose file names suggest groups (ctrl_R1 ... drug_R2) takes those groups as conditions in the Samples table, so one folder can hold a whole experiment. A dot between digits (0.1x) is a decimal, not a separator. Subfolders are dropped again. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01FkEGen3fmwFSWXXzfmCAZ3
Claude-Session: https://claude.ai/code/session_01FkEGeqPLo3oiL692oQ6Y3u Co-authored-by: Claude <noreply@anthropic.com>
The Threads field saved its default into params.json on every Configure visit, so a workflow kept the CPU count of the first machine (or an old fixed default such as 4) after the default became "all CPUs but one". A stored max_threads is now used only when it carries the _max_threads_user marker, and it is saved only when it differs from the default. The help text names a pinned max_threads.local instead of claiming the automatic default. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01FkEGengzrLtj7rLmG3KT17
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01FkEGengzrLtj7rLmG3KT17
Input folders: example files that arrive sorted, one folder per experiment
- Leave the _max_threads_user marker out of the method summary. - The executor takes the same local default as the Threads field, so an invalid max_threads.local runs with the CPU-based count it shows. - The help text names an app-pinned value from the setting itself, not from comparing it with the CPU-based count. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01FkEGengzrLtj7rLmG3KT17
Count a stored Threads value only when the user chose it
t0mdavid-m
enabled auto-merge
November 5, 2026 07:10
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Merges OpenMS/streamlit-template@9421478 into
main.Template changes: OpenMS/streamlit-template@a68f8e6...9421478
Merged without conflicts.
Before merging: run one workflow on the example data. New template features the app should configure are listed in the template PRs of the range above. Merge with a merge commit, not squash, or the next sync conflicts again on the same lines.
Opened by .github/workflows/template-sync.yml. See the sync-from-template skill.