All pull requests

Pull requests

• Readable names for TOPP tool parameters

  #493·t0mdavid-m opened Nov 4, 2026Member·

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• Keep every edit in the experimental design table

  #492·t0mdavid-m opened Nov 4, 2026Member·

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  1

  

• Default the thread budget to every usable CPU but one

  #491·t0mdavid-m opened Nov 4, 2026Member·

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  1

  

• Run page: per-sample overview for workflows that process samples one after another

  #490·t0mdavid-m opened Nov 4, 2026Member·

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  1

  

• Input folders: subfolders, and example files that arrive sorted

  #489·t0mdavid-m opened Nov 4, 2026Member·

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  1

  

• Protein database: UniProt tab after Your files, looser proteome search

  #488·t0mdavid-m opened Nov 4, 2026Member·

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• Docker: TOPP tools run again on OpenMS 3.6, and the Configure page says why a tool fails

  #487·t0mdavid-m opened Nov 4, 2026Member·

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• Let an app set the example accession of the PRIDE tab

  #486·t0mdavid-m opened Nov 4, 2026Member·

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  1

• Match .raw.gz in PRIDE listings, unquoted Python versions and other CMake spellings

  #484·t0mdavid-m opened Nov 4, 2026Member·

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  5

  

• Add optional S3 workspace storage and an S3-aware path helper

  #471·t0mdavid-m opened Nov 3, 2026Member·3 of 4 tasks·

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• CI: load the image into kind under the name the prod overlay uses

  #438·t0mdavid-m opened Nov 1, 2026Member·

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  8

  

• CI: wait for the ingress-nginx Deployment, not its pods

  #436·t0mdavid-m opened Nov 1, 2026Member·

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• Add a layout manager: users arrange a page's components

  #435·t0mdavid-m opened Nov 1, 2026Member·

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  3

  

• Electron rollout fixes: bundled Python on PATH, presets shipped, local mode skips the consent banner, e2e select picks

  #424·t0mdavid-m opened Oct 30, 2026Member·

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• Svelte app with OpenMS WebAssembly, running entirely on the user's machine

  #411·t0mdavid-m opened Oct 20, 2026Member·

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  1

  

• Derive the storage NetworkPolicy node addresses at deploy time

  #401·t0mdavid-m opened Aug 28, 2026Member·

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  4

• Add reusable linked-grid template + FileManager results store

  #395·t0mdavid-m opened Jun 5, 2026Member·

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• fix: correctly parse and route implicit boolean flags from ini files (#90)

  #352·Sanjith1013 opened Mar 12, 2026·

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  15

• Handle boolean flag parameters correctly in CommandExecutor.run_topp()

  #350·t0mdavid-m opened Mar 6, 2026Member·

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• Add workflow cancellation support for Redis queue mode

  #321·t0mdavid-m opened Jan 26, 2026Member·

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  3

• Build pyOpenMS from source in Windows CI pipeline

  #313·t0mdavid-m opened Jan 22, 2026Member·

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  10

• Add collapsible sections to tool parameters

  #306·t0mdavid-m opened Jan 16, 2026Member·

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  9

• Nextflow to TOPP workflow conversion guide

  #304·t0mdavid-m opened Jan 15, 2026Member·

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  3

• Add tool_instance_name parameter to enable multiple TOPP tool configurations

  #303·t0mdavid-m with CopilotAI opened Jan 15, 2026·

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• Switch Dockerfiles to python:3.10-slim-bookworm for lighter images

  #295·t0mdavid-m with CopilotAI opened Dec 3, 2025·

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